{"id":172,"date":"2013-03-08T14:25:06","date_gmt":"2013-03-08T13:25:06","guid":{"rendered":"https:\/\/protsci-us2b.univ-nantes.fr\/FP2B\/?page_id=172"},"modified":"2023-04-13T11:14:10","modified_gmt":"2023-04-13T09:14:10","slug":"fold_compb-help","status":"publish","type":"page","link":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/?page_id=172","title":{"rendered":"Fold_comPB help"},"content":{"rendered":"\n<h2 class=\"wp-block-heading\"><\/h2>\n\n\n\n<div class=\"wp-block-group is-layout-constrained wp-block-group-is-layout-constrained\">\n<p class=\"has-black-color has-text-color wp-block-paragraph\">Firstly, you have to choose the type of alignment you want to perform : global or local.                                                        Note that<mark style=\"background-color:rgba(0, 0, 0, 0)\" class=\"has-inline-color has-vivid-red-color\"> <strong>the type of alignment chosen will not influence the next steps<\/strong>.<\/mark><\/p>\n<\/div>\n\n\n\n<p class=\"wp-block-paragraph\" style=\"font-size:clamp(17.371px, 1.086rem + ((1vw - 3.2px) * 0.752), 27px);\"><strong>Input:<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Choose a fasta file that contains the amino acid sequences you want to test <strong>AND<\/strong> a pdb file as a target.<\/p>\n\n\n\n<figure class=\"wp-block-image size-full is-resized\"><a href=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/input_fold_ComPB.png?ssl=1\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" src=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/input_fold_ComPB.png?resize=329%2C202&#038;ssl=1\" alt=\"\" class=\"wp-image-281\" width=\"329\" height=\"202\" srcset=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/input_fold_ComPB.png?w=313&amp;ssl=1 313w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/input_fold_ComPB.png?resize=300%2C184&amp;ssl=1 300w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/input_fold_ComPB.png?resize=100%2C61&amp;ssl=1 100w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/input_fold_ComPB.png?resize=150%2C92&amp;ssl=1 150w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/input_fold_ComPB.png?resize=200%2C123&amp;ssl=1 200w\" sizes=\"auto, (max-width: 329px) 100vw, 329px\" \/><\/a><\/figure>\n\n\n\n<p class=\"wp-block-paragraph\">If you want to find an already existing job, you can write \u00ab\u00a0fold_comPB\u00a0\u00bb follow by the job&rsquo;s ID.<br><\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><a href=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/result_fold_ComPB-1.png?ssl=1\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" width=\"404\" height=\"151\" src=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/result_fold_ComPB-1.png?resize=404%2C151&#038;ssl=1\" alt=\"\" class=\"wp-image-287\" srcset=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/result_fold_ComPB-1.png?w=404&amp;ssl=1 404w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/result_fold_ComPB-1.png?resize=300%2C112&amp;ssl=1 300w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/result_fold_ComPB-1.png?resize=100%2C37&amp;ssl=1 100w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/result_fold_ComPB-1.png?resize=150%2C56&amp;ssl=1 150w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/result_fold_ComPB-1.png?resize=200%2C75&amp;ssl=1 200w\" sizes=\"auto, (max-width: 404px) 100vw, 404px\" \/><\/a><\/figure>\n\n\n\n<p class=\"wp-block-paragraph\">Finally, when the task is submitted (whatever method you choose) you can download the file.tgz.<br><\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><a href=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/Download_fold_ComPB-2.png?ssl=1\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" width=\"229\" height=\"82\" src=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/Download_fold_ComPB-2.png?resize=229%2C82&#038;ssl=1\" alt=\"\" class=\"wp-image-288\" srcset=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/Download_fold_ComPB-2.png?w=229&amp;ssl=1 229w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/Download_fold_ComPB-2.png?resize=100%2C36&amp;ssl=1 100w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/Download_fold_ComPB-2.png?resize=150%2C54&amp;ssl=1 150w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2023\/04\/Download_fold_ComPB-2.png?resize=200%2C72&amp;ssl=1 200w\" sizes=\"auto, (max-width: 229px) 100vw, 229px\" \/><\/a><\/figure>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Firstly, you have to choose the type of alignment you want to perform : global or local. Note that the type of alignment chosen will not influence the next steps. Input: Choose a fasta file that contains the amino acid sequences you want to test AND a pdb file as a target. If you want [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":16,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"full-width-page.php","meta":{"footnotes":""},"class_list":["post-172","page","type-page","status-publish","hentry"],"blocksy_meta":[],"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/pages\/172","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=172"}],"version-history":[{"count":6,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/pages\/172\/revisions"}],"predecessor-version":[{"id":289,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/pages\/172\/revisions\/289"}],"up":[{"embeddable":true,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/pages\/16"}],"wp:attachment":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=172"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}