{"id":84,"date":"2012-10-16T09:51:56","date_gmt":"2012-10-16T07:51:56","guid":{"rendered":"https:\/\/protsci-us2b.univ-nantes.fr\/FP2B\/?page_id=84"},"modified":"2026-02-05T15:26:04","modified_gmt":"2026-02-05T14:26:04","slug":"fold-compb","status":"publish","type":"page","link":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/?page_id=84","title":{"rendered":"Fold-ComPB"},"content":{"rendered":"<h2>Fold Compatibility using Protein Blocks<\/h2>\n<p>Fold-ComPB takes multiple protein sequences (<i>e.g.<\/i> protein sequences from a genome) as input and checks their compatibility with the protein fold provided by user.<\/p>\n<p><a href=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2012\/10\/FoldComp_Figure.png?ssl=1\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" src=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2012\/10\/FoldComp_Figure.png?resize=907%2C335&#038;ssl=1\" alt=\"foldcomp_figure\" class=\"aligncenter size-large wp-image-256\" width=\"907\" height=\"335\" srcset=\"https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2012\/10\/FoldComp_Figure.png?resize=1024%2C378&amp;ssl=1 1024w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2012\/10\/FoldComp_Figure.png?resize=300%2C111&amp;ssl=1 300w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2012\/10\/FoldComp_Figure.png?resize=768%2C283&amp;ssl=1 768w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2012\/10\/FoldComp_Figure.png?resize=100%2C37&amp;ssl=1 100w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2012\/10\/FoldComp_Figure.png?resize=150%2C55&amp;ssl=1 150w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2012\/10\/FoldComp_Figure.png?resize=200%2C74&amp;ssl=1 200w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2012\/10\/FoldComp_Figure.png?resize=450%2C166&amp;ssl=1 450w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2012\/10\/FoldComp_Figure.png?resize=600%2C221&amp;ssl=1 600w, https:\/\/i0.wp.com\/protsci-us2b.univ-nantes.fr\/forsa\/wp-content\/uploads\/2012\/10\/FoldComp_Figure.png?resize=900%2C332&amp;ssl=1 900w\" sizes=\"auto, (max-width: 907px) 100vw, 907px\" \/><\/a><\/p>\n<table>\n<tbody>\n<tr>\n<td><b>Threading using global alignment<\/b><\/td>\n<td><b>Threading using local alignment<\/b><\/td>\n<\/tr>\n<tr>\n<td>\n<form enctype=\"multipart\/form-data\" method=\"post\" action=\"\/cgi-bin\/FP2B\/Fold_comPB\/fold_compb_global.cgi\">\nUpload protein sequences (in fasta format):<br \/>\n<input name=\"upaaseq\" type=\"file\" accept=\".fasta\"><\/p>\n<p>Upload fold structure (in PDB format):<br \/>\n<input name=\"uppdbseq\" type=\"file\" accept=\".pdb\"><\/p>\n<p><center><br \/>\n<input type=\"submit\" value=\"submit\">  <input type=\"reset\" value=\"reset\" name=\".reset\"><br \/>\n<\/center><br \/>\n<\/form>\n<form enctype=\"multipart\/form-data\" method=\"post\" action=\"\/cgi-bin\/FP2B\/Fold_comPB\/results_fold_compb_global.cgi\">\nTo obtain the results of completed jobs, enter the assigned JOBID :<br \/>\n<textarea class=\"my-textarea-texte\" name=\"job_id\" rows=\"1\" cols=\"5\" style=\"font-family: courier;\"><\/textarea><\/p>\n<p><center><br \/>\n<input type=\"submit\" value=\"submit\"><br \/>\n<\/center><br \/>\n<center><br \/>\n<i>Your results are saved on the server for 21days.<\/i><br \/>\n<\/center><\/p>\n<\/form>\n<\/td>\n<td>\n<form enctype=\"multipart\/form-data\" method=\"post\" action=\"\/cgi-bin\/FP2B\/Fold_comPB\/fold_compb_local.cgi\">\nUpload protein sequences (in fasta format):<br \/>\n<input name=\"upaaseq\" type=\"file\" accept=\".fasta\"><\/p>\n<p>Upload fold structure (in PDB format):<br \/>\n<input name=\"uppdbseq\" type=\"file\" accept=\".pdb\"><\/p>\n<p><center><br \/>\n<input type=\"submit\" value=\"submit\">  <input type=\"reset\" value=\"reset\" name=\".reset\"><br \/>\n<\/center><br \/>\n<\/form>\n<form enctype=\"multipart\/form-data\" method=\"post\" action=\"\/cgi-bin\/FP2B\/Fold_comPB\/results_fold_compb_local.cgi\">\nTo obtain the results of completed jobs, enter the assigned JOBID :<br \/>\n<textarea class=\"my-textarea-texte\" name=\"job_id\" rows=\"1\" cols=\"5\" style=\"font-family: courier;\"><\/textarea><\/p>\n<p><center><br \/>\n<input type=\"submit\" value=\"submit\"><br \/>\n<\/center><br \/>\n<center><br \/>\n<i>Your results are saved on the server for 21days.<\/i><br \/>\n<\/center><\/p>\n<\/form>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"<p>Fold Compatibility using Protein Blocks Fold-ComPB takes multiple protein sequences (e.g. protein sequences from a genome) as input and checks their compatibility with the protein fold provided by user. Threading using global alignment Threading using local alignment Upload protein sequences (in fasta format): Upload fold structure (in PDB format): To obtain the results of completed [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"full-width-page.php","meta":{"footnotes":""},"class_list":["post-84","page","type-page","status-publish","hentry"],"blocksy_meta":[],"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/pages\/84","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=84"}],"version-history":[{"count":30,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/pages\/84\/revisions"}],"predecessor-version":[{"id":590,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=\/wp\/v2\/pages\/84\/revisions\/590"}],"wp:attachment":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/forsa\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=84"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}