{"id":590,"date":"2018-05-03T08:43:34","date_gmt":"2018-05-03T08:43:34","guid":{"rendered":"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/?page_id=590"},"modified":"2023-03-31T08:33:41","modified_gmt":"2023-03-31T08:33:41","slug":"anopheles-coluzzii","status":"publish","type":"page","link":"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/?page_id=590","title":{"rendered":"Anopheles coluzzii"},"content":{"rendered":"<p><!-- Image not found \"changed by Damien on March 31, 2023\"\n\n[caption width=\"238\" align=\"alignright\"]<img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/www.vectorbase.org\/sites\/default\/files\/ftp\/an_gambiae_0.png\" class=\"size-medium\" width=\"238\" height=\"156\"> (source : vectorbase.org)[\/caption]\n\n--><\/p>\n<p><em>Anopheles coluzzii<\/em>, formerly known as <em>Anopheles gambiae<\/em> M molecular form, was defined as a separate species in 2013 [1]. <em>An. coluzzii<\/em> belongs to the <em>Anopheles gambiae<\/em> species complex, which consists of at least seven species. Its genome was sequenced in 2006 [2].<\/p>\n<p>(source &amp; for more information : <a href=\"https:\/\/www.vectorbase.org\/organisms\/anopheles-coluzzii\" rel=\"noopener\" target=\"_blank\">Vectorbase<\/a>)<\/p>\n<p><strong>Statistics of OBPs from <em>Anopheles coluzzii<\/em>:<\/strong><\/p>\n<table style=\"height: 34px;\" width=\"600\" cellspacing=\"\u00bb0\u2033\" cellpadding=\"\u00bb0\u2033\" border=\"\u00bb1\u2033\">\n<tbody>\n<tr style=\"text-align: center;\">\n<td><\/td>\n<td>\n<form action=\"\/cgi-bin\/mobpdb\/resultat_sql.cgi\" method=\"post\">\n<button name=\"sql_query\" type=\"submit\" value=\"select * from proteins_v3 where Class like 'Classic%' and ID like 'ACOM%'\">Classic<\/button><br \/>\n<\/form>\n<\/td>\n<td>\n<form action=\"\/cgi-bin\/mobpdb\/resultat_sql.cgi\" method=\"post\">\n<button name=\"sql_query\" type=\"submit\" value=\"select * from proteins_v3 where Class like 'PlusC%' and ID like 'ACOM%'\">PlusC<\/button><br \/>\n<\/form>\n<\/td>\n<td>\n<form action=\"\/cgi-bin\/mobpdb\/resultat_sql.cgi\" method=\"post\">\n<button name=\"sql_query\" type=\"submit\" value=\"select * from proteins_v3 where Class like 'Two%' and ID like 'ACOM%'\">Two-domains*<\/button><br \/>\n<\/form>\n<\/td>\n<td>\n<form action=\"\/cgi-bin\/mobpdb\/resultat_sql.cgi\" method=\"post\">\n<button name=\"sql_query\" type=\"submit\" value=\"select * from proteins_v3 where Class like 'NA%' and ID like 'ACOM%'\">ND<\/button><br \/>\n<\/form>\n<\/td>\n<td>Total<\/td>\n<\/tr>\n<tr style=\"text-align: center;\">\n<td>Number of OBPs<\/td>\n<td style=\"text-align: center;\">23<\/td>\n<td style=\"text-align: center;\">17<\/td>\n<td style=\"text-align: center;\">10<\/td>\n<td style=\"text-align: center;\">1<\/td>\n<td style=\"text-align: center;\">51<\/td>\n<\/tr>\n<tr>\n<td><a href=\"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/?page_id=409\" target=\"_blank\" rel=\"noopener\">N\u00b0 with atomic structures (in PDB)<\/a><\/td>\n<td style=\"text-align: center;\">NA<\/td>\n<td style=\"text-align: center;\">NA<\/td>\n<td style=\"text-align: center;\">&#8211;<\/td>\n<td style=\"text-align: center;\">&#8211;<\/td>\n<td style=\"text-align: center;\">NA<\/td>\n<\/tr>\n<tr>\n<td>3D models<\/td>\n<td style=\"text-align: center;\">NA<\/td>\n<td style=\"text-align: center;\">NA<\/td>\n<td style=\"text-align: center;\">NA<\/td>\n<td style=\"text-align: center;\">&#8211;<\/td>\n<td style=\"text-align: center;\">NA<\/td>\n<\/tr>\n<tr>\n<td>Docking results**<\/td>\n<td style=\"text-align: center;\">NA<\/td>\n<td style=\"text-align: center;\">NA<\/td>\n<td style=\"text-align: center;\">NA<\/td>\n<td style=\"text-align: center;\">&#8211;<\/td>\n<td style=\"text-align: center;\">NA<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><font size=\"1\">*(also known as <em>duplex<\/em> or <em>atypical<\/em>)<br \/>\n**(molecular docking was performed on 126 odorants that are known repellants and attractants for mosquitoes)<br \/>\nND : undetermined<br \/>\nNA : Not Available<\/font><\/p>\n<table width=\"100%\">\n<tbody>\n<tr>\n<td>\n<strong>Search the <span style=\"color: #3366ff;\">genomic<\/span> database for all OBP genes from <em>Anopheles coluzzii<\/em><\/strong><\/p>\n<form action=\"\/cgi-bin\/mobpdb\/motclef.cgi\" method=\"post\">\n<button name=\"smalldialogue\" type=\"submit\" value=\"ACOM\">Browse genomic data<\/button><br \/>\n<\/form>\n<\/td>\n<\/tr>\n<tr>\n<td>\n<strong>Modelled structures of <em>Classic<\/em> OBP from <em>Anopheles coluzzii<\/em><\/strong><\/p>\n<form action=\"\/cgi-bin\/mobpdb\/resultat_sql.cgi\" method=\"post\">\n<button name=\"sql_query\" type=\"submit\" value=\"select ID, Name, Uniprot, Class, Cluster from proteins_v3 where Class = 'Classic' and Name like 'ACOM%'\">Browse models<\/button><br \/>\n<\/form>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Please cite<\/strong><br \/>\n<font size=\"1pt\"><a href=\"http:\/\/gbe.oxfordjournals.org\/content\/5\/1\/163.long\" target=\"_blank\" rel=\"noopener\">Manoharan M, Ng Fuk Chong M, Va\u00eftinadapoul\u00e9 A, Frumence E, Sowdhamini R, Offmann B. Comparative genomics of odorant binding proteins in Anopheles gambiae, Aedes aegypti, and Culex quinquefasciatus. <em>Genome Biol Evol.<\/em> 2013;<strong>5<\/strong>(1):163-80.<\/a><br \/>\n<\/font><\/p>\n<p><strong>Bibliographic references :<\/strong><\/p>\n<ol>\n<span style=\"font-size: x-small;\"><\/p>\n<li>Maureen Coetzee, Richard H. Hunt, Richard Wilkerson, Alessandra Della Torre, Mamadou B. Coulibaly &amp; Nora J. Besansky. 2013. Anopheles coluzzii and Anopheles amharicus, new members of the Anopheles gambiae complex. Zootaxa 3619 (3): 246\u2013274.<\/li>\n<li>Main BJ, Lee Y, Collier TC, et al. Complex genome evolution in Anopheles coluzzii associated with increased insecticide usage in Mali. Molecular Ecology. 2015;24(20):5145-5157. doi:10.1111\/mec.13382.<\/li>\n<p><\/span><\/ol>\n<p><!--\n\n\n\n<form action=\"\/cgi-bin\/mobpdb\/motclef3.cgi\" method=\"post\">  \n<textarea id =\"smallrecherche\" rows=\"1\" cols=\"10\" name=\"smalldialogue\" style=\"font-family : courier\" >ACOMOBP<\/textarea> <input type=\"submit\" value=\"Submit request\" \/>\n<\/form>\n\n\n\n--><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Anopheles coluzzii, formerly known as Anopheles gambiae M molecular form, was defined as a separate species in 2013 [1]. An. coluzzii belongs to the Anopheles gambiae species complex, which consists of at least seven species. Its genome was sequenced in 2006 [2]. (source &amp; for more information : Vectorbase) Statistics of OBPs from Anopheles coluzzii: [&hellip;]<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":9,"menu_order":6,"comment_status":"closed","ping_status":"closed","template":"page-without-sidebar.php","meta":{"footnotes":""},"class_list":["post-590","page","type-page","status-publish","hentry"],"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/index.php?rest_route=\/wp\/v2\/pages\/590","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/index.php?rest_route=\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=590"}],"version-history":[{"count":9,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/index.php?rest_route=\/wp\/v2\/pages\/590\/revisions"}],"predecessor-version":[{"id":849,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/index.php?rest_route=\/wp\/v2\/pages\/590\/revisions\/849"}],"up":[{"embeddable":true,"href":"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/index.php?rest_route=\/wp\/v2\/pages\/9"}],"wp:attachment":[{"href":"https:\/\/protsci-us2b.univ-nantes.fr\/mobpdb\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=590"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}