Input:
Enter an amino acid sequence in fasta format in the text area. The length of input sequence must be between 30 to 1,500 amino acids. OR upload an amino acid sequence in fasta format.
You can choose different options :
- The length threshold (we suggest 50% for a global alignment and 20% for a local alignment)
- The gap penalty (we suggest -4 for a global alignment and -20 or -15 for a local alignment)
- The type of alignment
- The fold library you want to use
- The ranks value is for number of top hits to be displayed on the result page
If you have already run a job, you can see your results by entering your JOBID in the text area.
Result page:
The results are delivered as followed (you can download this page as a text file from the Download button):
Different links and informations provided in the result page are described on the following figure:
Finally, below the table, you can see the detail of every alignment.